brightseg

Segment tissue from brightfield histology images

This file will become your README and also the index of your documentation.

Developer Guide

If you are new to using nbdev here are some useful pointers to get you started.

Install brightseg in Development mode

# make sure brightseg package is installed in development mode
$ pip install -e .

# make changes under nbs/ directory
# ...

# compile to have changes apply to brightseg
$ nbdev_prepare

Usage

Installation

Install latest from the GitHub repository:

$ pip install git+https://github.com/IntegratedPathologyUnit-ICR/brightseg.git

or from conda

$ conda install -c IntegratedPathologyUnit-ICR brightseg

or from pypi

$ pip install brightseg

Documentation

Documentation can be found hosted on this GitHub repository’s pages. Additionally you can find package manager specific guidelines on conda and pypi respectively.

How to use

Fill me in please! Don’t forget code examples:

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